species:   Rhsol
pid:       PID0515
parent:    Rhi-milR-80
paralog:   
locus:     KB317852.1:4745-4840
matures:   ['GGCGUAUGGUGUAGUGGUAUC', 'UUCCAUAGUUGCCGUGUGUUCU']
srr:       SRR1994877
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994877.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994877.cram KB317852.1:4745-4840

0 out of bounds
33 alignments
33 proper strand
30 stranded perfect matches

            **********************                            *********************             
UGAUCGGGUCUUUCCAUAGUUGCCGUGUGUUCUAUAGAUUUUUUAUACAGGUACCUACACUACAGGGCGUAUGGUGUAGUGGUAUCACGCCUGAUU
.((((((((....((((...(((((((((((((.(((......(((....)))......))).)))))))))))))..))))......))))))))
-----------------------------------------------------------------GGCGUAUGGUGUAGUGGUAUC---------- l=21 a=0 c
-----------UUCCAUAGUUGCCGUGUGUUCU--------------------------------------------------------------- l=22 a=0 c*
----------------------------------------------------------------GGGCGUAUGGUGUAGUGGU------------- l=19 a=9 ma
--------------CAUAGUUGCCGUGUGUUCUA-------------------------------------------------------------- l=20 a=0 ma*

----------------------------------------------------------------GGGCGUAUGGUGUAG----------------- l=15 a=1 
----------------------------------------------------------------GGGCGUAUGGUGUAGUGG-------------- l=18 a=1 
----------------------------------------------------------------GGGCGUAUGGUGUAGUGGU------------- l=19 a=9 (ma)
----------------------------------------------------------------GGGCGUAUGGUGUAGUGGUA------------ l=20 a=2 
----------------------------------------------------------------GGGCGUAUGGUGUAGUGGUAU----------- l=21 a=3 
----------------------------------------------------------------GGGCGUAUuGUGUAGUGGUAU----------- l=21 a=1 
----------------------------------------------------------------GGGCGUAUGGUGUAGUGGUAUC---------- l=22 a=5 
----------------------------------------------------------------GGGCGUAUuGUGUAGUGGUAUC---------- l=22 a=1 
----------------------------------------------------------------GGGCGUAUaGUGUAGUGGUAUCA--------- l=23 a=1 
----------------------------------------------------------------GGGCGUAUGGUGUAGUGGUAUCA--------- l=23 a=2 
----------------------------------------------------------------GGGCGUAUGGUGUAGUGGUAUCAC-------- l=24 a=1 
---------------------------------------------------------------AGGGCGUAUGGUGUAGUGGUA------------ l=21 a=1 
-------------------------------------------------------------ACAGGGCGUAUGGUGUAG----------------- l=18 a=2 
-------------------------------------------------------------ACAGGGCGUAUGGUGUAGU---------------- l=19 a=2 
-------------------------------------------------------------ACAGGGCGUAUGGUGUAGUGGU------------- l=22 a=1 

mb-01011
ax-1011001
ku-01
ss-101011111100
fn-111
